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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
11490-11680
(-)
glmS
9611-11432 (-)
Dgeo_0010
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)
Dgeo_0010
Single gene
DOOR ID:
1808550
Dgeo_0010
View Structure
2
25504-25647
(-)
cobalamin
24502-25372 (-)
Dgeo_0025
ABC-type iron transport system; periplasmic component
Dgeo_0025
Operon
DOOR ID:
193873
Dgeo_0024,
Dgeo_0025
View Structure
3
291095-291247
(+)
FMN
291283-292435 (+)
Dgeo_0300
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
Dgeo_0300
Operon
DOOR ID:
193934
Dgeo_0300,
Dgeo_0301,
Dgeo_0302,
Dgeo_0303
(ribH)
View Structure
4
298588-298671
(+)
c-di-GMP-II
298815-299223 (+)
Dgeo_0307
Dgeo_0307
Operon
DOOR ID:
193935
Dgeo_0307,
Dgeo_0308
View Structure
5
539909-539993
(+)
ZMP-ZTP
540047-541592 (+)
purH
Bifunctional purine biosynthesis protein PurH [Includes: Phosphoribosylaminoimidazolecarboxamide formyltransferase (0) (ATIC) (IMP synthase) (Inosinicase)]
Dgeo_0513
Operon
DOOR ID:
193978
Dgeo_0513
(purH)
,
Dgeo_0514
View Structure
6
547213-547339
(-)
SAM
545765-547097 (-)
Dgeo_0518
O-acetylhomoserine sulfhydrolase (9)
Dgeo_0518
Operon
DOOR ID:
193979
Dgeo_0516,
Dgeo_0517,
Dgeo_0518
View Structure
7
2028181-2028298
(-)
TPP
2026200-2028030 (-)
Dgeo_1924
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Dgeo_1924
Operon
DOOR ID:
194281
Dgeo_1919,
Dgeo_1920,
Dgeo_1921
(thiG)
,
Dgeo_1922,
Dgeo_1923,
Dgeo_1924
View Structure
8
2036288-2036401
(+)
TPP
2036458-2037490 (+)
Dgeo_1933
ABC-type thiamine transport system; periplasmic component
Dgeo_1933
Operon
DOOR ID:
194283
Dgeo_1933,
Dgeo_1934
View Structure
9
2285878-2285947
(+)
ykkC-III
2285965-2286286 (+)
Dgeo_2170
Dgeo_2170
single gene
DOOR ID:
1809360
Dgeo_2170
View Structure
Genome:
Deinococcus geothermalis DSM 11300
(
NC_008025.1
);
Phylum:
Deinococcus-Thermus
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carbohydrate metabolic process [GO:0005975]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_008025.1";i:2;s:34:"Deinococcus geothermalis DSM 11300";i:3;s:19:"Deinococcus-Thermus";i:4;s:4:"1297";i:5;s:11:"25504-25647";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:11:"24502-25372";i:10;s:1:"-";i:11;s:9:"Dgeo_0025";i:12;s:53:"ABC-type iron transport system; periplasmic component";i:13;s:9:"Dgeo_0025";i:14;s:6:"Operon";i:15;s:6:"193873";i:16;s:19:"Dgeo_0024;Dgeo_0025";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_008025.1";i:2;s:34:"Deinococcus geothermalis DSM 11300";i:3;s:19:"Deinococcus-Thermus";i:4;s:4:"1297";i:5;s:13:"291095-291247";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"291283-292435";i:10;s:1:"+";i:11;s:9:"Dgeo_0300";i:12;s:140:"Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]";i:13;s:9:"Dgeo_0300";i:14;s:6:"Operon";i:15;s:6:"193934";i:16;s:45:"Dgeo_0300;Dgeo_0301;Dgeo_0302;Dgeo_0303(ribH)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_008025.1";i:2;s:34:"Deinococcus geothermalis DSM 11300";i:3;s:19:"Deinococcus-Thermus";i:4;s:4:"1297";i:5;s:13:"298588-298671";i:6;s:1:"+";i:7;s:11:"c-di-GMP-II";i:8;s:0:"";i:9;s:13:"298815-299223";i:10;s:1:"+";i:11;s:9:"Dgeo_0307";i:12;s:0:"";i:13;s:9:"Dgeo_0307";i:14;s:6:"Operon";i:15;s:6:"193935";i:16;s:19:"Dgeo_0307;Dgeo_0308";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_008025.1";i:2;s:34:"Deinococcus geothermalis DSM 11300";i:3;s:19:"Deinococcus-Thermus";i:4;s:4:"1297";i:5;s:13:"539909-539993";i:6;s:1:"+";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:13:"540047-541592";i:10;s:1:"+";i:11;s:4:"purH";i:12;s:155:"Bifunctional purine biosynthesis protein PurH [Includes: Phosphoribosylaminoimidazolecarboxamide formyltransferase (0) (ATIC) (IMP synthase) (Inosinicase)]";i:13;s:9:"Dgeo_0513";i:14;s:6:"Operon";i:15;s:6:"193978";i:16;s:25:"Dgeo_0513(purH);Dgeo_0514";i:17;s:47:"'de novo' IMP biosynthetic process [GO:0006189]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_008025.1";i:2;s:34:"Deinococcus geothermalis DSM 11300";i:3;s:19:"Deinococcus-Thermus";i:4;s:4:"1297";i:5;s:13:"547213-547339";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"545765-547097";i:10;s:1:"-";i:11;s:9:"Dgeo_0518";i:12;s:36:"O-acetylhomoserine sulfhydrolase (9)";i:13;s:9:"Dgeo_0518";i:14;s:6:"Operon";i:15;s:6:"193979";i:16;s:29:"Dgeo_0516;Dgeo_0517;Dgeo_0518";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_008025.1";i:2;s:34:"Deinococcus geothermalis DSM 11300";i:3;s:19:"Deinococcus-Thermus";i:4;s:4:"1297";i:5;s:15:"2028181-2028298";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2026200-2028030";i:10;s:1:"-";i:11;s:9:"Dgeo_1924";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:9:"Dgeo_1924";i:14;s:6:"Operon";i:15;s:6:"194281";i:16;s:65:"Dgeo_1919;Dgeo_1920;Dgeo_1921(thiG);Dgeo_1922;Dgeo_1923;Dgeo_1924";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_008025.1";i:2;s:34:"Deinococcus geothermalis DSM 11300";i:3;s:19:"Deinococcus-Thermus";i:4;s:4:"1297";i:5;s:15:"2036288-2036401";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2036458-2037490";i:10;s:1:"+";i:11;s:9:"Dgeo_1933";i:12;s:57:"ABC-type thiamine transport system; periplasmic component";i:13;s:9:"Dgeo_1933";i:14;s:6:"Operon";i:15;s:6:"194283";i:16;s:19:"Dgeo_1933;Dgeo_1934";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_008025.1";i:2;s:34:"Deinococcus geothermalis DSM 11300";i:3;s:19:"Deinococcus-Thermus";i:4;s:4:"1297";i:5;s:15:"2285878-2285947";i:6;s:1:"+";i:7;s:8:"ykkC-III";i:8;s:0:"";i:9;s:15:"2285965-2286286";i:10;s:1:"+";i:11;s:9:"Dgeo_2170";i:12;s:0:"";i:13;s:9:"Dgeo_2170";i:14;s:11:"single gene";i:15;s:7:"1809360";i:16;s:9:"Dgeo_2170";i:17;s:0:"";i:18;s:15:"View Structure ";}}
