Genome: Rhodopseudomonas palustris BisB5 (NC_007958.1); Phylum: Alphaproteobacteria
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 714109-714317 (+)cobalamin714390-715464 (+)RPD_0629

Nickel/cobalt efflux system
RPD_0629Operon

DOOR ID: 186832
RPD_0629,
RPD_0630,
RPD_0631,
RPD_0632,
RPD_0633
View Structure
2 727425-727646 (-)cobalamin726317-726851 (-)RPD_0638

Bifunctional adenosylcobalamin biosynthesis protein (2)
RPD_0638Operon

DOOR ID: 186834
RPD_0637,
RPD_0638,
RPD_0639
View Structure
3 785607-785805 (+)cobalamin785852-788183 (+)RPD_0700

TonB-dependent siderophore receptor
RPD_0700Operon

DOOR ID: 186847
RPD_0700,
RPD_0701
View Structure
4 1017504-1017583 (-)sam-alpha1016202-1017429 (-)RPD_0903

O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase)
RPD_0903Single gene

DOOR ID: 1794078
RPD_0903 View Structure
5 1469791-1469842 (-)mini-ykkC1469448-1469766 (-)sugE

PSEEN1409Single gene

DOOR ID: 1809890
PSEEN1409 (sugE) View Structure
6 1851667-1851711 (-)mini-ykkC1851323-1851644 (-)Bcen_1670

Bcen_1670Single gene

DOOR ID: 1815585
Bcen_1670 View Structure
7 2437685-2437791 (+)ykkC-yxkD2437865-2438936 (+)RPD_2183

Putative taurine transport system protein
RPD_2183Operon

DOOR ID: 187120
RPD_2183,
RPD_2184,
RPD_2185,
RPD_2186,
RPD_2187,
RPD_2188
View Structure
8 2565609-2565817 (-)cobalamin2564405-2565329 (-)RPD_2299

RPD_2299Single gene

DOOR ID: 1794732
RPD_2299 View Structure
9 2591019-2591234 (-)cobalamin2590321-2590909 (-)RPD_2321

RPD_2321Operon

DOOR ID: 187143
RPD_2318,
RPD_2319,
RPD_2320 (cobH),
RPD_2321
View Structure
10 2593935-2594143 (+)cobalamin2594292-2595405 (+)RPD_2324

Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (NN:DBI PRT) (1) (N(1)-alpha-phosphoribosyltransferase)
RPD_2324Operon

DOOR ID: 187145
RPD_2324,
RPD_2325,
RPD_2326
View Structure
11 3255793-3256000 (-)cobalamin3254891-3255593 (-)RPD_2919

RPD_2919Operon

DOOR ID: 187251
RPD_2918,
RPD_2919
View Structure
12 3256310-3256518 (+)cobalamin3256771-3257134 (+)RPD_2921

RPD_2921Single gene

DOOR ID: 1795013
RPD_2921 View Structure
13 3259915-3260113 (-)cobalamin3258831-3259842 (-)RPD_2924

Transport system permease protein
RPD_2924Operon

DOOR ID: 187252
RPD_2922,
RPD_2923,
RPD_2924
View Structure
14 3812110-3812251 (+)TPP3813344-3813536 (+)RPD_3429

Thiamine biosynthesis protein ThiS
RPD_3429Operon

DOOR ID: 187348
RPD_3428,
RPD_3429
View Structure
15 4563880-4563959 (-)sam-alpha4562580-4563780 (-)metX

Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)
RPD_4099Operon

DOOR ID: 187470
RPD_4098,
RPD_4099 (metX)
View Structure
16 4855579-4855783 (+)cobalamin4855892-4858007 (+)RPD_4390

TonB-dependent receptor
RPD_4390Single gene

DOOR ID: 1795707
RPD_4390 View Structure