About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
13183-13283
(-)
TPP
11809-13177 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
CYA_0011
Single gene
DOOR ID:
1755230
CYA_0011
(thiC)
View Structure
2
145312-145517
(-)
cobalamin
142591-144856 (-)
metE-1
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)
CYA_0148
Single gene
DOOR ID:
1755321
CYA_0148
(metE-1)
View Structure
3
166789-166994
(-)
cobalamin
164139-166383 (-)
metE-2
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)
CYA_0167
Single gene
DOOR ID:
1755329
CYA_0167
(metE-2)
View Structure
4
519935-520035
(-)
fluoride
518174-519785 (-)
CYA_0502
Transporter; monovalent cation:proton antiporter-2 (CPA2) family/universal stress family protein
CYA_0502
Single gene
DOOR ID:
1755494
CYA_0502
View Structure
5
931667-931758
(-)
glutamine
931130-931571 (-)
CYA_0922
CYA_0922
Operon
DOOR ID:
171060
CYA_0921,
CYA_0922
View Structure
6
1135181-1135322
(-)
cobalamin
1133197-1135141 (-)
CYA_1108
Transporter; outer membrane receptor (OMR) family
CYA_1108
Single gene
DOOR ID:
1755788
CYA_1108
View Structure
7
1201635-1201745
(-)
SAM
1200072-1201317 (-)
metK
S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)
CYA_1186
Single gene
DOOR ID:
1755821
CYA_1186
(metK)
View Structure
8
2383437-2383580
(+)
cobalamin
2383609-2384638 (+)
cbiX
Sirohydrochlorin cobaltochelatase
CYA_2373
Single gene
DOOR ID:
1756387
CYA_2373
(cbiX)
View Structure
Genome:
Synechococcus sp. JA-3-3Ab
(
NC_007775.1
);
Phylum:
Cyanobacteria/Melainabacteria group
a:9:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_007775.1";i:2;s:27:"Synechococcus sp. JA-3-3Ab ";i:3;s:35:"Cyanobacteria/Melainabacteria group";i:4;s:7:"1798711";i:5;s:11:"13183-13283";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:11:"11809-13177";i:10;s:1:"-";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:8:"CYA_0011";i:14;s:11:"Single gene";i:15;s:7:"1755230";i:16;s:14:"CYA_0011(thiC)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_007775.1";i:2;s:27:"Synechococcus sp. JA-3-3Ab ";i:3;s:35:"Cyanobacteria/Melainabacteria group";i:4;s:7:"1798711";i:5;s:13:"145312-145517";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"142591-144856";i:10;s:1:"-";i:11;s:6:"metE-1";i:12;s:172:"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)";i:13;s:8:"CYA_0148";i:14;s:11:"Single gene";i:15;s:7:"1755321";i:16;s:16:"CYA_0148(metE-1)";i:17;s:44:"methionine biosynthetic process [GO:0009086]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_007775.1";i:2;s:27:"Synechococcus sp. JA-3-3Ab ";i:3;s:35:"Cyanobacteria/Melainabacteria group";i:4;s:7:"1798711";i:5;s:13:"166789-166994";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"164139-166383";i:10;s:1:"-";i:11;s:6:"metE-2";i:12;s:172:"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)";i:13;s:8:"CYA_0167";i:14;s:11:"Single gene";i:15;s:7:"1755329";i:16;s:16:"CYA_0167(metE-2)";i:17;s:44:"methionine biosynthetic process [GO:0009086]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_007775.1";i:2;s:27:"Synechococcus sp. JA-3-3Ab ";i:3;s:35:"Cyanobacteria/Melainabacteria group";i:4;s:7:"1798711";i:5;s:13:"519935-520035";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:13:"518174-519785";i:10;s:1:"-";i:11;s:8:"CYA_0502";i:12;s:96:"Transporter; monovalent cation:proton antiporter-2 (CPA2) family/universal stress family protein";i:13;s:8:"CYA_0502";i:14;s:11:"Single gene";i:15;s:7:"1755494";i:16;s:8:"CYA_0502";i:17;s:31:"response to stress [GO:0006950]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_007775.1";i:2;s:27:"Synechococcus sp. JA-3-3Ab ";i:3;s:35:"Cyanobacteria/Melainabacteria group";i:4;s:7:"1798711";i:5;s:13:"931667-931758";i:6;s:1:"-";i:7;s:9:"glutamine";i:8;s:0:"";i:9;s:13:"931130-931571";i:10;s:1:"-";i:11;s:8:"CYA_0922";i:12;s:0:"";i:13;s:8:"CYA_0922";i:14;s:6:"Operon";i:15;s:6:"171060";i:16;s:17:"CYA_0921;CYA_0922";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_007775.1";i:2;s:27:"Synechococcus sp. JA-3-3Ab ";i:3;s:35:"Cyanobacteria/Melainabacteria group";i:4;s:7:"1798711";i:5;s:15:"1135181-1135322";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1133197-1135141";i:10;s:1:"-";i:11;s:8:"CYA_1108";i:12;s:49:"Transporter; outer membrane receptor (OMR) family";i:13;s:8:"CYA_1108";i:14;s:11:"Single gene";i:15;s:7:"1755788";i:16;s:8:"CYA_1108";i:17;s:34:"siderophore transport [GO:0015891]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_007775.1";i:2;s:27:"Synechococcus sp. JA-3-3Ab ";i:3;s:35:"Cyanobacteria/Melainabacteria group";i:4;s:7:"1798711";i:5;s:15:"1201635-1201745";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1200072-1201317";i:10;s:1:"-";i:11;s:4:"metK";i:12;s:87:"S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)";i:13;s:8:"CYA_1186";i:14;s:11:"Single gene";i:15;s:7:"1755821";i:16;s:14:"CYA_1186(metK)";i:17;s:97:"one-carbon metabolic process [GO:0006730]; S-adenosylmethionine biosynthetic process [GO:0006556]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_007775.1";i:2;s:27:"Synechococcus sp. JA-3-3Ab ";i:3;s:35:"Cyanobacteria/Melainabacteria group";i:4;s:7:"1798711";i:5;s:15:"2383437-2383580";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2383609-2384638";i:10;s:1:"+";i:11;s:4:"cbiX";i:12;s:34:"Sirohydrochlorin cobaltochelatase ";i:13;s:8:"CYA_2373";i:14;s:11:"Single gene";i:15;s:7:"1756387";i:16;s:14:"CYA_2373(cbiX)";i:17;s:43:"cobalamin biosynthetic process [GO:0009236]";i:18;s:15:"View Structure ";}}
