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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
191448-191569
(-)
glycine
190334-191423 (-)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
Tbd_0178
Single gene
DOOR ID:
1688517
Tbd_0178
(gcvT)
View Structure
2
191580-191666
(-)
glycine
190334-191423 (-)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
Tbd_0178
Single gene
DOOR ID:
1688517
Tbd_0178
(gcvT)
View Structure
3
532900-532975
(+)
c-di-GMP-I
533042-534863 (+)
Tbd_0507
Serine protease; subtilase family
Tbd_0507
single gene
DOOR ID:
1688597
Tbd_0507
View Structure
4
2591597-2591667
(-)
SAH
2589762-2590110 (-)
Tbd_2518
Putative membrane protein
Tbd_2518
Operon
DOOR ID:
140076
Tbd_2517,
Tbd_2518,
Tbd_2519,
Tbd_2520,
Tbd_2521
View Structure
5
2777160-2777260
(-)
TPP
2775117-2777076 (-)
Tbd_2694
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Tbd_2694
Operon
DOOR ID:
140113
Tbd_2693,
Tbd_2694
View Structure
6
2801605-2801811
(-)
cobalamin
2799649-2801545 (-)
Tbd_2720
Iron complex outermembrane recepter protein
Tbd_2720
Single gene
DOOR ID:
1689199
Tbd_2720
View Structure
Genome:
Thiobacillus denitrificans ATCC 25259
(
NC_007404.1
);
Phylum:
Betaproteobacteria
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