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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
83295-83394
(-)
TPP
82280-83264 (-)
tbpA
Thiamin-binding periplasmic protein
SSON_0074
Operon
DOOR ID:
138690
SSON_0072
(thiQ)
,
SSON_0073
(thiP)
,
SSON_0074
(tbpA)
View Structure
2
1413782-1413884
(-)
yybP-ykoY
1413083-1413704 (-)
SSON_1339
Probable manganese efflux pump MntP
SSON_1339
Single gene
DOOR ID:
1687153
SSON_1339
View Structure
3
2154556-2154731
(-)
cobalamin
2153900-2154398 (-)
SSON_2055
SSON_2055
Single gene
DOOR ID:
1687492
SSON_2055
View Structure
4
2257033-2257129
(-)
TPP
2256209-2256998 (-)
thiM
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
SSON_2152
Operon
DOOR ID:
139053
SSON_2149
(yegW)
,
SSON_2150
(yegX)
,
SSON_2151
(thiD)
,
SSON_2152
(thiM)
View Structure
5
3338078-3338226
(-)
FMN
3337320-3337974 (-)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
SSON_3178
Single gene
DOOR ID:
1687849
SSON_3178
(ribB)
View Structure
6
4382769-4382959
(+)
cobalamin
4383023-4384868 (+)
btuB
Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
SSON_4139
Operon
DOOR ID:
139424
SSON_4139
(btuB)
,
SSON_4140
(murI)
View Structure
7
4414391-4414491
(-)
TPP
4412414-4414310 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
SSON_4167
Operon
DOOR ID:
139430
SSON_4162
(thiH)
,
SSON_4163
(thiG)
,
SSON_4164
(thiS)
,
SSON_4165
(thiF)
,
SSON_4166
(thiE)
,
SSON_4167
(thiC)
View Structure
8
4693869-4693984
(+)
Mg sensor
4694077-4696774 (+)
mgtA
Mg2+ transport ATPase; P-type 1
SSON_4423
Single gene
DOOR ID:
1688301
SSON_4423
(mgtA)
View Structure
Genome:
Shigella sonnei Ss046
(
NC_007384.1
);
Phylum:
Gammaproteobacteria
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