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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
547373-547419
(+)
mini-ykkC
547917-548274 (-)
frdD
YP_0512
Operon
DOOR ID:
96041
YP_0512
(frdD)
,
YP_0513
(frdC)
,
YP_0514
(frdB)
,
YP_0515
(frdA)
View Structure
2
1078019-1078165
(-)
MOCO
1076349-1076832 (-)
moaC
Cyclic pyranopterin monophosphate synthase (7) (Molybdenum cofactor biosynthesis protein C)
YP_0999
Operon
DOOR ID:
96134
YP_0997
(moaE)
,
YP_0998
(moaD)
,
YP_0999
(moaC)
View Structure
3
1200714-1200777
(+)
fluoride
1200871-1201261 (+)
ccrB
Putative fluoride ion transporter CrcB 1
YP_1118
Single gene
DOOR ID:
1598711
YP_1118
(ccrB)
View Structure
4
1789028-1789227
(+)
yybP-ykoY
1789237-1789807 (+)
YP_1638
Putative manganese efflux pump MntP
YP_1638
Single gene
DOOR ID:
1598924
YP_1638
View Structure
5
3027733-3027837
(-)
TPP
3026808-3027609 (-)
thiD
Phosphomethylpyrimidine kinase (Putative phosphomethylpyrimidine kinase)
YP_2725
Single gene
DOOR ID:
1599404
YP_2725
(thiD)
View Structure
6
3309736-3309925
(+)
FMN
3310166-3310820 (+)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
YP_2973
Single gene
DOOR ID:
1599506
YP_2973
(ribB)
View Structure
7
3451026-3451151
(+)
TPP
3451284-3453330 (+)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
YP_3102
Operon
DOOR ID:
96517
YP_3101,
YP_3102
(thiC)
,
YP_3103
(thiE)
,
YP_3104
(thiF)
,
YP_3105
(thiS)
,
YP_3106
(thiG)
,
YP_3107
(thiH)
View Structure
8
3497648-3497910
(+)
cobalamin
3497978-3499874 (+)
btuB
Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
YP_3138
Operon
DOOR ID:
96524
YP_3138
(btuB)
,
YP_3139
(murI)
View Structure
9
4158569-4158706
(+)
TPP
4158780-4159773 (+)
tbpA
Thiamine-binding periplasmic protein
YP_3657
Operon
DOOR ID:
96622
YP_3657
(tbpA)
,
YP_3658
(thiP)
,
YP_3659
(thiQ)
View Structure
Genome:
Yersinia pestis biovar Microtus str. 91001
(
NC_005810.1
);
Phylum:
Gammaproteobacteria
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thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_005810.1";i:2;s:43:"Yersinia pestis biovar Microtus str. 91001 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3497648-3497910";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3497978-3499874";i:10;s:1:"+";i:11;s:4:"btuB";i:12;s:89:"Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)";i:13;s:7:"YP_3138";i:14;s:6:"Operon";i:15;s:5:"96524";i:16;s:27:"YP_3138(btuB);YP_3139(murI)";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_005810.1";i:2;s:43:"Yersinia pestis biovar Microtus str. 91001 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4158569-4158706";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4158780-4159773";i:10;s:1:"+";i:11;s:4:"tbpA";i:12;s:36:"Thiamine-binding periplasmic protein";i:13;s:7:"YP_3657";i:14;s:6:"Operon";i:15;s:5:"96622";i:16;s:41:"YP_3657(tbpA);YP_3658(thiP);YP_3659(thiQ)";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}}
