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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
99249-99354
(+)
TPP
99432-100224 (+)
thiM
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
lp_0113
Operon
DOOR ID:
77671
lp_0113
(thiM)
,
lp_0114
(thiD)
,
lp_0115
(thiE)
,
lp_0116
View Structure
2
202607-202700
(-)
TPP
201934-202504 (-)
lp_0219
ABC transporter; permease protein
lp_0219
Operon
DOOR ID:
77687
lp_0217,
lp_0218,
lp_0219
View Structure
3
482228-482273
(+)
PreQ1
482281-482788 (+)
lp_0533
Transport protein; QueT family
lp_0533
Single gene
DOOR ID:
1549300
lp_0533
View Structure
4
761448-761599
(+)
glmS
761631-763449 (+)
glmS1
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)
lp_0822
Single gene
DOOR ID:
1549365
lp_0822
(glmS1)
View Structure
5
928916-929097
(+)
lysine
929240-930692 (+)
lysP
Lysine transport protein
lp_1008
Single gene
DOOR ID:
1549451
lp_1008
(lysP)
View Structure
6
1189828-1189933
(+)
SMK_box
1191254-1192757 (+)
lp_1302
Methionine transport protein
lp_1302
Single gene
DOOR ID:
1549535
lp_1302
View Structure
7
1705901-1706022
(-)
FMN
1705192-1705777 (-)
lp_1887
Riboflavin transporter
lp_1887
Single gene
DOOR ID:
1549708
lp_1887
View Structure
8
1741167-1741232
(-)
fluoride
1739825-1741115 (-)
enoA2
Enolase 2 (1) (2-phospho-D-glycerate hydro-lyase 2) (2-phosphoglycerate dehydratase 2)
lp_1920
Operon
DOOR ID:
77973
lp_1919
(mntA)
,
lp_1920
(eno)
View Structure
9
1874486-1874649
(-)
ykoK
1872642-1874385 (-)
lp_2077
Nitrate/sulfonate/bicarbonate ABC transporter;permease protein
lp_2077
Operon
DOOR ID:
78003
lp_2075,
lp_2076,
lp_2077
View Structure
10
2410476-2410574
(+)
purine
2410633-2411974 (+)
lp_2710
Xanthine permease
lp_2710
Single gene
DOOR ID:
1549963
lp_2710
(pucK)
View Structure
11
2519515-2519559
(-)
PreQ1
2518513-2519494 (-)
lp_2825
Purine nucleosidase; inosine-uridine preferring
lp_2825
Operon
DOOR ID:
78117
lp_2824,
lp_2825
View Structure
12
2968731-2968829
(-)
purine
2966961-2968653 (-)
adeC
Adenine deaminase (Adenase) (Adenine aminase)
lp_3334
Single gene
DOOR ID:
1550215
lp_3334
(adeC)
View Structure
Genome:
Lactobacillus plantarum WCFS1
(
NC_004567.2
);
Phylum:
Firmicutes
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thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_004567.2";i:2;s:29:"Lactobacillus plantarum WCFS1";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"202607-202700";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"201934-202504";i:10;s:1:"-";i:11;s:7:"lp_0219";i:12;s:33:"ABC transporter; permease protein";i:13;s:7:"lp_0219";i:14;s:6:"Operon";i:15;s:5:"77687";i:16;s:23:"lp_0217;lp_0218;lp_0219";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_004567.2";i:2;s:29:"Lactobacillus plantarum WCFS1";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"482228-482273";i:6;s:1:"+";i:7;s:5:"PreQ1";i:8;s:0:"";i:9;s:13:"482281-482788";i:10;s:1:"+";i:11;s:7:"lp_0533";i:12;s:30:"Transport protein; QueT family";i:13;s:7:"lp_0533";i:14;s:11:"Single gene";i:15;s:7:"1549300";i:16;s:7:"lp_0533";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_004567.2";i:2;s:29:"Lactobacillus plantarum WCFS1";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"761448-761599";i:6;s:1:"+";i:7;s:4:"glmS";i:8;s:0:"";i:9;s:13:"761631-763449";i:10;s:1:"+";i:11;s:5:"glmS1";i:12;s:240:"Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)";i:13;s:7:"lp_0822";i:14;s:11:"Single gene";i:15;s:7:"1549365";i:16;s:14:"lp_0822(glmS1)";i:17;s:99:"carbohydrate derivative biosynthetic process [GO:1901137]; glutamine metabolic process [GO:0006541]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_004567.2";i:2;s:29:"Lactobacillus plantarum WCFS1";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"928916-929097";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:13:"929240-930692";i:10;s:1:"+";i:11;s:4:"lysP";i:12;s:24:"Lysine transport protein";i:13;s:7:"lp_1008";i:14;s:11:"Single gene";i:15;s:7:"1549451";i:16;s:13:"lp_1008(lysP)";i:17;s:33:"amino acid transport [GO:0006865]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_004567.2";i:2;s:29:"Lactobacillus plantarum WCFS1";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1189828-1189933";i:6;s:1:"+";i:7;s:7:"SMK_box";i:8;s:0:"";i:9;s:15:"1191254-1192757";i:10;s:1:"+";i:11;s:7:"lp_1302";i:12;s:28:"Methionine transport protein";i:13;s:7:"lp_1302";i:14;s:11:"Single gene";i:15;s:7:"1549535";i:16;s:7:"lp_1302";i:17;s:36:"transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_004567.2";i:2;s:29:"Lactobacillus plantarum WCFS1";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1705901-1706022";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1705192-1705777";i:10;s:1:"-";i:11;s:7:"lp_1887";i:12;s:22:"Riboflavin transporter";i:13;s:7:"lp_1887";i:14;s:11:"Single gene";i:15;s:7:"1549708";i:16;s:7:"lp_1887";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_004567.2";i:2;s:29:"Lactobacillus plantarum WCFS1";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1741167-1741232";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"1739825-1741115";i:10;s:1:"-";i:11;s:5:"enoA2";i:12;s:86:"Enolase 2 (1) (2-phospho-D-glycerate hydro-lyase 2) (2-phosphoglycerate dehydratase 2)";i:13;s:7:"lp_1920";i:14;s:6:"Operon";i:15;s:5:"77973";i:16;s:26:"lp_1919(mntA);lp_1920(eno)";i:17;s:31:"glycolytic process [GO:0006096]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_004567.2";i:2;s:29:"Lactobacillus plantarum WCFS1";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1874486-1874649";i:6;s:1:"-";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"1872642-1874385";i:10;s:1:"-";i:11;s:7:"lp_2077";i:12;s:62:"Nitrate/sulfonate/bicarbonate ABC transporter;permease protein";i:13;s:7:"lp_2077";i:14;s:6:"Operon";i:15;s:5:"78003";i:16;s:23:"lp_2075;lp_2076;lp_2077";i:17;s:36:"transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_004567.2";i:2;s:29:"Lactobacillus plantarum WCFS1";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2410476-2410574";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:15:"2410633-2411974";i:10;s:1:"+";i:11;s:7:"lp_2710";i:12;s:17:"Xanthine permease";i:13;s:7:"lp_2710";i:14;s:11:"Single gene";i:15;s:7:"1549963";i:16;s:13:"lp_2710(pucK)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_004567.2";i:2;s:29:"Lactobacillus plantarum WCFS1";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2519515-2519559";i:6;s:1:"-";i:7;s:5:"PreQ1";i:8;s:0:"";i:9;s:15:"2518513-2519494";i:10;s:1:"-";i:11;s:7:"lp_2825";i:12;s:48:"Purine nucleosidase; inosine-uridine preferring ";i:13;s:7:"lp_2825";i:14;s:6:"Operon";i:15;s:5:"78117";i:16;s:15:"lp_2824;lp_2825";i:17;s:30:"metabolic process [GO:0008152]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_004567.2";i:2;s:29:"Lactobacillus plantarum WCFS1";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2968731-2968829";i:6;s:1:"-";i:7;s:6:"purine";i:8;s:0:"";i:9;s:15:"2966961-2968653";i:10;s:1:"-";i:11;s:4:"adeC";i:12;s:46:"Adenine deaminase (Adenase) (Adenine aminase) ";i:13;s:7:"lp_3334";i:14;s:11:"Single gene";i:15;s:7:"1550215";i:16;s:13:"lp_3334(adeC)";i:17;s:38:"adenine catabolic process [GO:0006146]";i:18;s:15:"View Structure ";}}
