RiboswitchDB

Genome: Vibrio vulnificus CMCP6 chromosome II (NC_004460.2); Phylum: Gammaproteobacteria

S.No.

Riboswitch Location and Strand

Riboswitch class

Downstream gene location and Strand

Downstream gene name/gene product description

Locus_tag of downstream gene

Single gene/within operon (According to DOOR database)

Operon details (List of genes within operon and their Locus_tag)

Predicted Structure

1

45881-45972 (-)

c-di-GMP-I

44284-45742 (-)

VV2_0044

GlcNAc-binding protein A

single gene

DOOR ID: 1534702

VV2_0044

2

504363-504462 (+)

purine

504485-505481 (+)

add

Adenosine deaminase (Adenosine aminohydrolase)

Single gene

DOOR ID: 1534847

VV2_0468 (add)

3

559536-559644 (-)

yybP-ykoY

558366-559335 (-)

VV2_0505

Single gene

DOOR ID: 1534854

VV2_0505

4

1571980-1572120 (-)

FMN

1571226-1571883 (-)

VV2_1426

3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)

Single gene

DOOR ID: 1535236

VV2_1426

5

1577203-1577301 (-)

TPP

1576274-1577114 (-)

VV2_1433

Single gene

DOOR ID: 1535243

VV2_1433

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";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_004460.2";i:2;s:37:"Vibrio vulnificus CMCP6 chromosome II";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"504363-504462";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:13:"504485-505481";i:10;s:1:"+";i:11;s:3:"add";i:12;s:47:"Adenosine deaminase  (Adenosine aminohydrolase)";i:13;s:8:"VV2_0468";i:14;s:11:"Single gene";i:15;s:7:"1534847";i:16;s:13:"VV2_0468(add)";i:17;s:112:"nucleotide metabolic process [GO:0009117]; purine ribonucleoside monophosphate biosynthetic process [GO:0009168]";i:18;s:15:"View Structure
";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_004460.2";i:2;s:37:"Vibrio vulnificus CMCP6 chromosome II";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"559536-559644";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:13:"558366-559335";i:10;s:1:"-";i:11;s:8:"VV2_0505";i:12;s:0:"";i:13;s:8:"VV2_0505";i:14;s:11:"Single gene";i:15;s:7:"1534854";i:16;s:8:"VV2_0505";i:17;s:0:"";i:18;s:15:"View Structure
";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_004460.2";i:2;s:37:"Vibrio vulnificus CMCP6 chromosome II";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1571980-1572120";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1571226-1571883";i:10;s:1:"-";i:11;s:8:"VV2_1426";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:8:"VV2_1426";i:14;s:11:"Single gene";i:15;s:7:"1535236";i:16;s:8:"VV2_1426";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure
";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_004460.2";i:2;s:37:"Vibrio vulnificus CMCP6 chromosome II";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1577203-1577301";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1576274-1577114";i:10;s:1:"-";i:11;s:8:"VV2_1433";i:12;s:0:"";i:13;s:8:"VV2_1433";i:14;s:11:"Single gene";i:15;s:7:"1535243";i:16;s:8:"VV2_1433";i:17;s:0:"";i:18;s:15:"View Structure
";}}