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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
1037866-1038056
(+)
cobalamin
1038242-1040561 (+)
metE
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)
SCO0985
Single gene
DOOR ID:
1488642
SCO0985
View Structure
2
1044457-1044581
(-)
cobalamin
1043989-1044394 (-)
2SCG2.02c
SCO0989
Single gene
DOOR ID:
1488646
SCO0989
View Structure
3
1045879-1046126
(+)
cobalamin
1046250-1047114 (+)
2SCG2.04
SCO0991
Single gene
DOOR ID:
1488648
SCO0991
View Structure
4
1051400-1051583
(+)
cobalamin
1051612-1052656 (+)
2SCG2.09
Putative lipoprotein
SCO0996
Single gene
DOOR ID:
1488653
SCO0996
View Structure
5
1312583-1312652
(+)
ydaO-yuaA
1312683-1313157 (+)
2SCG1.15
Putative NLP/P60 family protein (Putative secreted protein)
SCO1240
Single gene
DOOR ID:
1488889
SCO1240
View Structure
6
1457844-1457939
(-)
glycine
1454779-1457665 (-)
SC10A9.20c
Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))
SCO1378
Single gene
DOOR ID:
1489023
SCO1378
View Structure
7
1539274-1539404
(-)
FMN
1538522-1539125 (-)
SC6D7A.06c
Putative riboflavin synthase
SCO1443
Single gene
DOOR ID:
1489084
SCO1443
View Structure
8
1975611-1975764
(+)
cobalamin
1975868-1976852 (+)
cobD
Cobalamin biosynthesis protein CobD
SCO1847
Single gene
DOOR ID:
1489473
SCO1847
(cobD)
View Structure
9
2264719-2264830
(+)
TPP
2266029-2266230 (+)
SC6E10.02
SCO2108
Single gene
DOOR ID:
1489723
SCO2108
View Structure
10
2308654-2308770
(-)
SAM-IV
2307075-2308506 (-)
SC6G10.19c
Putative aminotransferase
SCO2146
Single gene
DOOR ID:
1489760
SCO2146
View Structure
11
2491706-2491796
(+)
cobalamin
2491925-2493185 (+)
SCC53.12
Putative secreted protein
SCO2321
Single gene
DOOR ID:
1489926
SCO2321
View Structure
12
3153741-3153808
(-)
ykkC-III
3153388-3153709 (-)
SCE6.35c
SCO2898
single gene
DOOR ID:
1490482
SCO2898
View Structure
13
3392821-3392987
(-)
ydaO-yuaA
3392082-3392817 (-)
SCE41.06c
Putative secreted protein
SCO3097
Single gene
DOOR ID:
1490672
SCO3097
View Structure
14
4321574-4321763
(+)
TPP
4324440-4325793 (-)
SCQ11.12c
SCO3929
Single gene
DOOR ID:
1491469
SCO3929
View Structure
15
4507165-4507321
(+)
ydaO-yuaA
4507332-4508376 (+)
SCD17.12
Probable peptidase
SCO4108
Single gene
DOOR ID:
1491643
SCO4108
View Structure
16
4708436-4708583
(+)
SAM
4708606-4709893 (+)
SCD95A.26
Putative threonine synthase
SCO4293
Single gene
DOOR ID:
1491820
SCO4293
View Structure
17
5004067-5004239
(-)
ydaO-yuaA
5003570-5004062 (-)
SCD16A.01
SCO4582
Single gene
DOOR ID:
1492098
SCO4582
View Structure
18
5218188-5218370
(-)
ydaO-yuaA
5216984-5218181 (-)
SCD63A.07c
Putative NLP/P60 family secreted protein
SCO4796
Single gene
DOOR ID:
1492307
SCO4796
View Structure
19
5269161-5269250
(+)
ZMP-ZTP
5269285-5270731 (+)
glyA
Serine hydroxymethyltransferase (SHMT) (Serine methylase)
SCO4837
Single gene
DOOR ID:
1492346
SCO4837
(glyA)
View Structure
20
5688293-5688390
(-)
cobalamin
5685767-5688143 (-)
nrdL
Ribonucleoside-diphosphate reductase
SCO5226
Single gene
DOOR ID:
1492727
SCO5226
View Structure
21
5959002-5959095
(-)
glycine
5957727-5958846 (-)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
SCO5472
Single gene
DOOR ID:
1492962
SCO5472
(gcvT)
View Structure
22
6144164-6144269
(+)
TPP
6144348-6145470 (+)
SC6A9.21c
Putative solute binding lipoprotein
SCO5646
Single gene
DOOR ID:
1493130
SCO5646
View Structure
23
6392145-6392309
(+)
ydaO-yuaA
6392321-6393074 (+)
SC9B10.06
Putative membrane protein
SCO5839
Single gene
DOOR ID:
1493316
SCO5839
View Structure
24
6532171-6532357
(-)
cobalamin
6531442-6532141 (-)
cbiM
Cobalt transport protein CbiM (Energy-coupling factor transporter probable substrate-capture protein CbiM) (ECF transporter S component CbiM)
SCO5961
Single gene
DOOR ID:
1487721
SCO5961
View Structure
25
7531017-7531174
(+)
ydaO-yuaA
7531178-7532117 (+)
SC6A5.22
Putative secreted peptidase
SCO6773
Single gene
DOOR ID:
1494198
SCO6773
View Structure
26
8019983-8020062
(+)
cobalamin
8020183-8021290 (+)
SC2H12.15
Putative FecCD-family membrane transport protein
SCO7216
Single gene
DOOR ID:
1494625
SCO7216
View Structure
Genome:
Streptomyces coelicolor A3(2)
(
NC_003888.3
);
Phylum:
Actinobacteria
a:27:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_003888.3";i:2;s:30:"Streptomyces coelicolor A3(2) ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1037866-1038056";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1038242-1040561";i:10;s:1:"+";i:11;s:4:"metE";i:12;s:172:"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)";i:13;s:7:"SCO0985";i:14;s:11:"Single gene";i:15;s:7:"1488642";i:16;s:7:"SCO0985";i:17;s:43:"homocysteine metabolic process [GO:0050667]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_003888.3";i:2;s:30:"Streptomyces coelicolor A3(2) ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1044457-1044581";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1043989-1044394";i:10;s:1:"-";i:11;s:9:"2SCG2.02c";i:12;s:0:"";i:13;s:7:"SCO0989";i:14;s:11:"Single gene";i:15;s:7:"1488646";i:16;s:7:"SCO0989";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_003888.3";i:2;s:30:"Streptomyces coelicolor A3(2) ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1045879-1046126";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1046250-1047114";i:10;s:1:"+";i:11;s:8:"2SCG2.04";i:12;s:0:"";i:13;s:7:"SCO0991";i:14;s:11:"Single gene";i:15;s:7:"1488648";i:16;s:7:"SCO0991";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_003888.3";i:2;s:30:"Streptomyces coelicolor A3(2) ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1051400-1051583";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1051612-1052656";i:10;s:1:"+";i:11;s:8:"2SCG2.09";i:12;s:20:"Putative lipoprotein";i:13;s:7:"SCO0996";i:14;s:11:"Single gene";i:15;s:7:"1488653";i:16;s:7:"SCO0996";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_003888.3";i:2;s:30:"Streptomyces coelicolor A3(2) ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1312583-1312652";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"1312683-1313157";i:10;s:1:"+";i:11;s:8:"2SCG1.15";i:12;s:59:"Putative NLP/P60 family protein (Putative secreted protein)";i:13;s:7:"SCO1240";i:14;s:11:"Single gene";i:15;s:7:"1488889";i:16;s:7:"SCO1240";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_003888.3";i:2;s:30:"Streptomyces coelicolor A3(2) ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1457844-1457939";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1454779-1457665";i:10;s:1:"-";i:11;s:10:"SC10A9.20c";i:12;s:151:"Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))";i:13;s:7:"SCO1378";i:14;s:11:"Single gene";i:15;s:7:"1489023";i:16;s:7:"SCO1378";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_003888.3";i:2;s:30:"Streptomyces coelicolor A3(2) ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1539274-1539404";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1538522-1539125";i:10;s:1:"-";i:11;s:10:"SC6D7A.06c";i:12;s:28:"Putative riboflavin synthase";i:13;s:7:"SCO1443";i:14;s:11:"Single gene";i:15;s:7:"1489084";i:16;s:7:"SCO1443";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_003888.3";i:2;s:30:"Streptomyces coelicolor A3(2) ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1975611-1975764";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1975868-1976852";i:10;s:1:"+";i:11;s:4:"cobD";i:12;s:35:"Cobalamin biosynthesis protein CobD";i:13;s:7:"SCO1847";i:14;s:11:"Single gene";i:15;s:7:"1489473";i:16;s:13:"SCO1847(cobD)";i:17;s:43:"cobalamin biosynthetic process [GO:0009236]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_003888.3";i:2;s:30:"Streptomyces coelicolor A3(2) ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2264719-2264830";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2266029-2266230";i:10;s:1:"+";i:11;s:9:"SC6E10.02";i:12;s:0:"";i:13;s:7:"SCO2108";i:14;s:11:"Single gene";i:15;s:7:"1489723";i:16;s:7:"SCO2108";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_003888.3";i:2;s:30:"Streptomyces coelicolor A3(2) ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2308654-2308770";i:6;s:1:"-";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"2307075-2308506";i:10;s:1:"-";i:11;s:10:"SC6G10.19c";i:12;s:25:"Putative aminotransferase";i:13;s:7:"SCO2146";i:14;s:11:"Single gene";i:15;s:7:"1489760";i:16;s:7:"SCO2146";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_003888.3";i:2;s:30:"Streptomyces coelicolor A3(2) ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2491706-2491796";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2491925-2493185";i:10;s:1:"+";i:11;s:8:"SCC53.12";i:12;s:25:"Putative secreted protein";i:13;s:7:"SCO2321";i:14;s:11:"Single gene";i:15;s:7:"1489926";i:16;s:7:"SCO2321";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_003888.3";i:2;s:30:"Streptomyces coelicolor A3(2) ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3153741-3153808";i:6;s:1:"-";i:7;s:8:"ykkC-III";i:8;s:0:"";i:9;s:15:"3153388-3153709";i:10;s:1:"-";i:11;s:8:"SCE6.35c";i:12;s:0:"";i:13;s:7:"SCO2898";i:14;s:11:"single gene";i:15;s:7:"1490482";i:16;s:7:"SCO2898";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_003888.3";i:2;s:30:"Streptomyces coelicolor A3(2) ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3392821-3392987";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"3392082-3392817";i:10;s:1:"-";i:11;s:9:"SCE41.06c";i:12;s:25:"Putative secreted protein";i:13;s:7:"SCO3097";i:14;s:11:"Single gene";i:15;s:7:"1490672";i:16;s:7:"SCO3097";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_003888.3";i:2;s:30:"Streptomyces coelicolor A3(2) ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4321574-4321763";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4324440-4325793";i:10;s:1:"-";i:11;s:9:"SCQ11.12c";i:12;s:0:"";i:13;s:7:"SCO3929";i:14;s:11:"Single gene";i:15;s:7:"1491469";i:16;s:7:"SCO3929";i:17;s:0:"";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_003888.3";i:2;s:30:"Streptomyces coelicolor A3(2) ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4507165-4507321";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"4507332-4508376";i:10;s:1:"+";i:11;s:8:"SCD17.12";i:12;s:18:"Probable peptidase";i:13;s:7:"SCO4108";i:14;s:11:"Single gene";i:15;s:7:"1491643";i:16;s:7:"SCO4108";i:17;s:0:"";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_003888.3";i:2;s:30:"Streptomyces coelicolor A3(2) ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4708436-4708583";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"4708606-4709893";i:10;s:1:"+";i:11;s:9:"SCD95A.26";i:12;s:27:"Putative threonine synthase";i:13;s:7:"SCO4293";i:14;s:11:"Single gene";i:15;s:7:"1491820";i:16;s:7:"SCO4293";i:17;s:0:"";i:18;s:15:"View Structure ";}i:17;a:19:{i:0;i:17;i:1;s:11:"NC_003888.3";i:2;s:30:"Streptomyces coelicolor A3(2) ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"5004067-5004239";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"5003570-5004062";i:10;s:1:"-";i:11;s:9:"SCD16A.01";i:12;s:0:"";i:13;s:7:"SCO4582";i:14;s:11:"Single gene";i:15;s:7:"1492098";i:16;s:7:"SCO4582";i:17;s:0:"";i:18;s:15:"View Structure ";}i:18;a:19:{i:0;i:18;i:1;s:11:"NC_003888.3";i:2;s:30:"Streptomyces coelicolor A3(2) ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"5218188-5218370";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"5216984-5218181";i:10;s:1:"-";i:11;s:10:"SCD63A.07c";i:12;s:40:"Putative NLP/P60 family secreted protein";i:13;s:7:"SCO4796";i:14;s:11:"Single gene";i:15;s:7:"1492307";i:16;s:7:"SCO4796";i:17;s:0:"";i:18;s:15:"View Structure ";}i:19;a:19:{i:0;i:19;i:1;s:11:"NC_003888.3";i:2;s:30:"Streptomyces coelicolor A3(2) ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"5269161-5269250";i:6;s:1:"+";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:15:"5269285-5270731";i:10;s:1:"+";i:11;s:4:"glyA";i:12;s:58:"Serine hydroxymethyltransferase (SHMT) (Serine methylase) ";i:13;s:7:"SCO4837";i:14;s:11:"Single gene";i:15;s:7:"1492346";i:16;s:13:"SCO4837(glyA)";i:17;s:100:"glycine biosynthetic process from serine [GO:0019264]; tetrahydrofolate interconversion [GO:0035999]";i:18;s:15:"View Structure ";}i:20;a:19:{i:0;i:20;i:1;s:11:"NC_003888.3";i:2;s:30:"Streptomyces coelicolor A3(2) ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"5688293-5688390";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"5685767-5688143";i:10;s:1:"-";i:11;s:4:"nrdL";i:12;s:37:"Ribonucleoside-diphosphate reductase ";i:13;s:7:"SCO5226";i:14;s:11:"Single gene";i:15;s:7:"1492727";i:16;s:7:"SCO5226";i:17;s:28:"DNA replication [GO:0006260]";i:18;s:15:"View Structure ";}i:21;a:19:{i:0;i:21;i:1;s:11:"NC_003888.3";i:2;s:30:"Streptomyces coelicolor A3(2) ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"5959002-5959095";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"5957727-5958846";i:10;s:1:"-";i:11;s:4:"gcvT";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:7:"SCO5472";i:14;s:11:"Single gene";i:15;s:7:"1492962";i:16;s:13:"SCO5472(gcvT)";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:22;a:19:{i:0;i:22;i:1;s:11:"NC_003888.3";i:2;s:30:"Streptomyces coelicolor A3(2) ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"6144164-6144269";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"6144348-6145470";i:10;s:1:"+";i:11;s:9:"SC6A9.21c";i:12;s:35:"Putative solute binding lipoprotein";i:13;s:7:"SCO5646";i:14;s:11:"Single gene";i:15;s:7:"1493130";i:16;s:7:"SCO5646";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure 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