Genome: Clostridium perfringens str. 13 (NC_003366.1); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 197260-197343 (+)c-di-GMP-II197404-199576 (+)CPE0155

CPE0155Operon

DOOR ID: 53506		CPE0155,
CPE0156		 View Structure
2 248249-248449 (+)cobalamin248807-249479 (+)cbiM

CPE0192Operon

DOOR ID: 53511		CPE0192 (cbiM),
CPE0193 (cbiN),
CPE0194 (cbiQ),
CPE0195 (cbiO)		 View Structure
3 422819-422921 (+)purine423158-423731 (+)xpt

Xanthine phosphoribosyltransferase 1 (XPRTase 1) (2)		CPE0335Single gene

DOOR ID: 1479184		CPE0335 (xpt) View Structure
4 512987-513088 (-)purine511368-512727 (-)uapC

Putative purine permease CPE0397		CPE0397Single gene

DOOR ID: 1479220		CPE0397 (uapC) View Structure
5 704095-704210 (+)FMN704571-705672 (+)ribB

CPE0566Operon

DOOR ID: 53573		CPE0566 (ribB),
CPE0567 (risA)		 View Structure
6 731613-731672 (+)fluoride731756-733070 (+)CPE0590

CPE0590Single gene

DOOR ID: 1479313		CPE0590 View Structure
7 742872-743043 (+)lysine743069-744470 (+)lysA

CPE0595Single gene

DOOR ID: 1479318		CPE0595 (lysA) View Structure
8 843540-843641 (+)TPP843790-845101 (+)thiC

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)		CPE0679Single gene

DOOR ID: 1479363		CPE0679 (thiC) View Structure
9 1241729-1241907 (+)cobalamin1242217-1243135 (+)CPE1041

Probable ferric ion ABC transpoter		CPE1041Operon

DOOR ID: 53642		CPE1041,
CPE1042,
CPE1043,
CPE1044,
CPE1045 (cbiP)		 View Structure
10 1366062-1366236 (-)lysine1364466-1365936 (-)CPE1166

Lysine specific permease		CPE1166Single gene

DOOR ID: 1479635		CPE1166 View Structure
11 1431132-1431311 (-)cobalamin1430167-1431010 (-)cbiK

CPE1228Operon

DOOR ID: 53672		CPE1221 (cbiG),
CPE1222 (cbiF),
CPE1223 (cbiL),
CPE1224 (cbiT),
CPE1225 (cbiE),
CPE1226 (cbiD),
CPE1227 (cbiC),
CPE1228 (cbiK)		 View Structure
12 1510209-1510292 (-)c-di-GMP-I1505002-1510066 (-)CPE1281

Uncharacterized protein		CPE1281single gene

DOOR ID: 1479698		CPE1281 View Structure
13 1549328-1549501 (-)cobalamin1548447-1548957 (-)CPE1308

CPE1308Operon

DOOR ID: 53680		CPE1307,
CPE1308		 View Structure
14 1580937-1581046 (-)TPP1580066-1580861 (-)thiD

CPE1338Operon

DOOR ID: 53687		CPE1336 (thiE),
CPE1337 (thiM),
CPE1338 (thiD)		 View Structure
15 1623314-1623418 (+)TPP1623510-1624206 (+)CPE1372

CPE1372Single gene

DOOR ID: 1479755		CPE1372 View Structure
16 1674599-1674697 (-)glycine1673141-1674530 (-)CPE1419

Probable amino acid transport protein		CPE1419Single gene

DOOR ID: 1479781		CPE1419 View Structure
17 1876267-1876370 (-)TPP1875945-1876140 (-)CPE1603

CPE1603Single gene

DOOR ID: 1479879		CPE1603 View Structure
18 2073211-2073405 (-)MOCO2071841-2073062 (-)CPE1793

Molybdenum cofactor biosynthesis protein		CPE1793Single gene

DOOR ID: 1479939		CPE1793 View Structure
19 2295283-2295327 (-)PreQ12293973-2294954 (-)CPE2003

Probable nucleoside hydrolase		CPE2003Operon

DOOR ID: 53818		CPE2001,
CPE2002,
CPE2003		 View Structure
20 2484104-2484221 (-)FMN2483380-2483977 (-)CPE2167

Riboflavin transporter		CPE2167Single gene

DOOR ID: 1480071		CPE2167 View Structure
21 2499978-2500083 (-)SAM2498553-2499729 (-)metK

CPE2177Single gene

DOOR ID: 1479005		CPE2177 (metK) View Structure
22 2618324-2618421 (-)purine2616681-2618136 (-)CPE2276

Inosine-5'-monophosphate dehydrogenase (IMP dehydrogenase) (IMPD) (IMPDH) (05)		CPE2276Operon

DOOR ID: 53874		CPE2275 (guaA),
CPE2276		 View Structure
23 2665068-2665231 (-)SAM2663654-2664968 (-)CPE2317

Probable Na+/H+ antiporter		CPE2317Single gene

DOOR ID: 1480137		CPE2317 View Structure
24 2678966-2679184 (-)glmS2677050-2678883 (-)glmS

Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)		CPE2327Operon

DOOR ID: 53882		CPE2326,
CPE2327 (glmS)		 View Structure
25 2871102-2871201 (-)purine2869990-2870989 (-)add

Adenosine deaminase (Adenosine aminohydrolase)		CPE2506Single gene

DOOR ID: 1480199		CPE2506 (add) View Structure
26 2895328-2895497 (-)lysine2893447-2895163 (-)CPE2527

CPE2527Single gene

DOOR ID: 1480207		CPE2527 View Structure
27 2917370-2917472 (-)TPP2916486-2917152 (-)CPE2546

Aminopyrimidine aminohydrolase 		CPE2546Operon

DOOR ID: 53930		CPE2545,
CPE2546		 View Structure