Genome: Pseudomonas putida KT2440 (NC_002947.3); Phylum: Gammaproteobacteria
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 616380-616521 (-)FMN615648-616299 (-)ribB

3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
PP_0530Single gene

DOOR ID: 1435391
PP_0530 (ribB) View Structure
2 875978-876117 (-)yybP-ykoY875304-875889 (-)PP_0760

PP_0760Single gene

DOOR ID: 1435483
PP_0760 View Structure
3 1866934-1867155 (+)cobalamin1867274-1867886 (+)cobO

Cob(I)yrinic acid a;c-diamide adenosyltransferase (7) (Cob(I)alamin adenosyltransferase) (Corrinoid adenosyltransferase)
PP_1672Operon

DOOR ID: 32865
PP_1672 (cobO),
PP_1673 (cobB),
PP_1674,
PP_1675 (cobD),
PP_1676 (cobC),
PP_1677 (cobQ),
PP_1678 (cobU),
PP_1679 (cobT),
PP_1680,
PP_1681 (cobS),
PP_1682
View Structure
4 1897096-1897147 (-)mini-ykkC1896752-1897070 (-)sugE

PP_1701Operon

DOOR ID: 538425
SPP_1701,
SPP_1702
View Structure
5 2765025-2765223 (-)cobalamin2763903-2764998 (-)PP_2418

Putative cobalamin ABC transporter; periplasmic
PP_2418Operon

DOOR ID: 33015
PP_2416,
PP_2417,
PP_2418
View Structure
6 2768765-2768973 (-)cobalamin2766529-2768716 (-)PP_2420

Outer membrane ferric siderophore receptor
PP_2420Operon

DOOR ID: 33016
PP_2419,
PP_2420
View Structure
7 3613932-3614046 (+)TPP3614124-3614772 (+)pet18

Aminopyrimidine aminohydrolase
PP_3185Operon

DOOR ID: 33161
PP_3185 (pet18),
PP_3186
View Structure
8 3857543-3857766 (+)cobalamin3858739-3859129 (+)PP_3409

Putative Cobalamin biosynthesis protein cobE
PP_3409Operon

DOOR ID: 33210
PP_3409,
PP_3410 (cobM),
PP_3411
View Structure
9 3981798-3982004 (-)cobalamin3980630-3981698 (-)cobW

Protein CobW
PP_3508Operon

DOOR ID: 33229
PP_3506,
PP_3507 (cobN),
PP_3508 (cobW)
View Structure
10 5596228-5596334 (-)TPP5594192-5596073 (-)thiC

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
PP_4922Single gene

DOOR ID: 1437089
PP_4922 (thiC) View Structure
11 5858006-5858075 (-)SAH5856064-5857456 (+)PP_5133

PP_5133Operon

DOOR ID: 33548
PP_5133,
PP_5134
View Structure